AA b16: SGIR (b19) paper finalization tasks

VVN: aa-b16-sgir-paper-tasks-dv_ClaOp47Max_NNv1_2026m04d27

Mode: EDEN

Effort: Max

Status: OPEN (multiple sub-tasks; each has its own status below)

Origin: Migrated 2026m04d27 from source/matheology/hell/mm/b/19/si/aa-sgir-paper-tasks_2026m04d18.rst during the cleanup that followed the Zenodo Prototype Evolvix Compiler description revision (deposit DOI 10.5281/zenodo.19679456). The original flat-named file is now in source/matheology/hell/mm/b/19/si/HH/ for historical reference; this AA b16 file is the canonical home going forward.

Background

The b19 SGIR pandemic paper (Stopping a Pandemic in Mid-Flight: SGIR Models Show How Small Increases in Germ Gaps Can Avert Mass Casualties) is at OOv3r0p0 (signed off by Claude Opus 4.7 Max in the 2026m04d21 PDF restructure pass; LLoL Hu-VVN signature line still empty). The remaining finalization tasks are listed below with their AIMS k (Kick = importance) and s (Speed = urgency) coordinates.

The task list captures items LLoL identified during the SGIR adversarial review session (2026m04d18) plus items surfaced subsequently. Most are explicitly deferred due to LLoL’s stated resource constraints — they would strengthen the paper but are not blocking first submission.

Task list

AnyAims Task List for SGIR paper (b19) finalization

k	s	Task	Notes / Status
k5	s7	Buy-in page: discuss global equity pricing. The $8/person/year cap is deliberately calibrated to the median income of the world’s poorest countries (widow’s mite principle). The buy-in page should explain: (1) why the cap exists and who it is calibrated for; (2) how those in wealthier countries can sponsor access for others who lack credit cards or bank accounts; (3) the transparency regime that ensures the institution works for everybody including the weakest; (4) how the author’s own resource constraints inform choices (e.g., food-supply research for cheap-and-healthy trade-offs) that could benefit others in similar situations if scaled with a team; (5) current extreme inequalities and how the buy-in model addresses them. Defer full discussion until a team is available to help scale transparency.	Status: DEFERRED. From adversarial review Panel 7 (Global South) response. LLoL’s design intent: everyone can buy-in to the effort of someone audited to work for EVERYBODY. This is not charity; it is shared investment in shared infrastructure.
k4	s6	Sensitivity analysis for 60-fold result. Run limited parameter variations (even a few) to show robustness of multiplicative compounding effect.	Status: DEFERRED due to resource constraints. Even 3–5 runs with +/-25% variation in Shed and Catch rates would strengthen the paper substantially.
k4	s6	Non-US scenario. Add one scenario with different population density and healthcare capacity parameters.	Status: DEFERRED. Would demonstrate generality beyond US context.
k4	s7	Decide what to do with the bridge appendix. Options: (a) include with SGIR paper as supplementary, (b) publish separately, (c) fold into b18 candidacy as extension, (d) split into multiple targeted pieces.	Status: PENDING LLoL DECISION after reviewing appendix draft.
k3	s2	Full literature review and positioning. Detailed comparison to Imperial College, IHME, SIDARTHE, and other COVID-19 models.	Status: DEFERRED. Key citations added to paper; full review requires more time than currently available.
k3	s2	ODE system writeout. Explicit differential equations for the full model.	Status: DEFERRED to companion methods paper. Compiler + source code constitute executable specification for now.
k3	s3	Fill VVN (Hu) signature line in b19 header. Line 84 of the b19 paper currently shows | **VVN (Hu):** | (empty). When LLoL is ready to sign off on the paper as human-OO, fill in the Hu VVN.	Status: PENDING LLoL DECISION. Surfaced 2026m04d27 during the AA migration.
k4	s4	Resolve ``si/wwv-sgir-evolvix-study`` toctree placement. The file is currently commented out of b19’s index.rst toctree (lines 34-35) with reason “Removed from toctree to prevent PDF citation conflicts”. Decision needed: convert that file to use sphinxcontrib-bibtex (:cite: syntax) instead of RST native footnote citations ([X]_), so the bibliography systems don’t clash; or commit to a different placement.	Status: DONE 2026m04d27 (Claude Opus 4.7 Max, EDEN, max effort). All 12 RST-native [X]_ citations were converted to :cite:`X` against existing references.bib and b19-epidemiology.bib entries; EvolvixCompiler was renamed to PrototypeEvolvixCompiler per canonical key. File re-added to b19 toctree; build confirmed 0 duplicate-citation warnings. Full audit trail at LLog b14 (infra): wwv-sgir RST-citations → sphinxcontrib-bibtex migration.
k4	s4	Deposit ``PandemicSociety101`` model code on Zenodo. SI.1 of the b19 paper notes this is “planned as part of the same #AuditTheMath campaign”. The mechanics are identical to the Evolvix compiler deposit just completed.	Status: PENDING. Could be done in parallel with b19 submission or as a separate session.
k3	s4	Submission path decision for b19. Options: arXiv preprint, journal submission (which?), Zenodo deposit of paper itself, or all of the above.	Status: PENDING LLoL DECISION.

Companion prompt: si/wwv-sgir-evolvix-study toctree resolution

For a fresh Claude session to resolve the toctree-conflict deferred item above. Paste verbatim into the new session.

Dedicated session: resolve the toctree-conflict for source/matheology/hell/mm/b/19/si/wwv-sgir-evolvix-study-dv_llol_oov1_2026m04d17.rst so it can be re-included in the b19 paper’s toctree without triggering Sphinx duplicate-citation-target warnings.

Mode: EDEN. Effort: max.

The current b19 index.rst (lines 34-35) shows:

Two files share the b19 directory tree but use different citation systems:

• b19-sgir_basic-gap-of-germs-2020-epidemiology-oov1_2026.rst uses sphinxcontrib-bibtex via :cite:`X` (e.g. :cite:`PrototypeEvolvixCompiler` after the 2026m04d27 migration), with the bibliography entries living in source/_bib/references.bib and source/_bib/b19-epidemiology.bib.

• si/wwv-sgir-evolvix-study-dv_llol_oov1_2026m04d17.rst uses RST-native footnote-citation syntax via [X]_ for references and .. [X] ... definitions inline at the end of the file (e.g. .. [PrototypeEvolvixCompiler] Loewe, L. (2015). ...).

When both files appear in the same toctree, Sphinx may emit duplicate-target warnings because the [X] HTML target is produced by both citation systems independently.

Convert the wwv-sgir file to use sphinxcontrib-bibtex (:cite:`X` syntax) so its citations resolve through the same bibliography pipeline as b19. After conversion, re-add the file to b19’s index.rst toctree and confirm the build is clean.

1. Read source/matheology/hell/mm/b/19/si/wwv-sgir-evolvix-study-dv_llol_oov1_2026m04d17.rst and inventory all RST-native citations: every [X]_ reference and every .. [X] ... definition.

2. For each cited key, check whether it already exists in source/_bib/references.bib or source/_bib/b19-epidemiology.bib. If it exists, the conversion is a syntax change only. If it does not exist, add a new entry to whichever bib file fits its scope (cross-cutting → references.bib; b19-only → b19-epidemiology.bib).

3. Replace [X]_ with :cite:`X` throughout the file. Delete the .. [X] ... definition lines at the bottom (the bibliography will now be rendered via sphinxcontrib-bibtex’s bibliography directive at the appropriate place in the file).

4. Add a bibliography directive at the bottom of the file:

   to render only the citations actually used in this file.

5. Re-add the file to b19’s index.rst toctree (uncomment the lines 34-35).

6. Run make dev (or make html for the full multi-language build) and confirm there are no duplicate-citation warnings. Report any warnings honestly — do not silence them.

• Per LLoL’s standing rule (CLAUDE.md): NEVER delete content files; if the wwv-sgir file is deemed obsolete after conversion, move it to a local HH/ HistoryHeap folder for human review, do not delete.

• Per CLAUDE.md Language Rules: use “test”/”check” not “validate”/”verify”; YYYYmMMdDD dates; OK/NOT OK not PASS/FAIL.

• Do NOT silently change the citation key for EvolvixCompiler in the wwv-sgir file — the canonical key in references.bib is now PrototypeEvolvixCompiler (renamed 2026m04d27); update the wwv-sgir references to match.

• The wwv-sgir file is dated 2026m04d17 in its filename; that is historical metadata. Update the file’s internal VVN to reflect the conversion (e.g. dv_ClaOp47Max_OOv2r0p0_2026m04dXX_HHhMM) when you record the new state, but do not rename the filename unless LLoL approves.

• Updated wwv-sgir file with bibtex-style citations.

• Possibly new entries in references.bib or b19-epidemiology.bib.

• Updated b19 index.rst with the file re-added to the toctree.

• A short report listing: which citations were converted, which bib entries were added (if any), the build outcome (OK / NOT OK with details), and any open items for LLoL.

Cross-references

• AnyAims (AA) Registry — AA registry (parent)

• MM b/19 — Paper b19: SGIR Basic Gap-of-Germs Epidemiology — the b19 paper home

• Stopping a Pandemic in Mid-Flight: SGIR Models Show How Small Increases in Germ Gaps Can Avert Mass Casualties — the paper itself

• AA b11: Integrate Evolvix into the b18a-b18e and b20 paper sequence — companion AA on Evolvix integration across the broader paper sequence

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Created by: Claude Opus 4.7 Max in EDEN mode at LLoL’s request (2026m04d27), migrating the existing flat-named SGIR-task file into the lettered-numbering AnyAims registry.