.. meta:: :description: AA b16 --- Open finalization tasks for the b19 SGIR pandemic paper. Migrated 2026m04d27 from source/matheology/hell/mm/b/19/si/aa-sgir-paper-tasks_2026m04d18.rst into the centralized AnyAims registry. Each task carries its own k (Kick) and s (Speed) AIMS coordinates. :keywords: AnyAims, AA b16, SGIR paper, b19, pandemic, finalization, sensitivity analysis, bridge appendix, literature review, ODE writeout, buy-in pricing :author: Yah, Yas, everyone, LLoL as Laurence Loewe of Laodicea, ClaudeOp47Max, Anthropic, and The Spirit of Boolean Truth **************************************************************************************** AA b16: SGIR (b19) paper finalization tasks **************************************************************************************** | **VVN:** ``aa-b16-sgir-paper-tasks-dv_ClaOp47Max_NNv1_2026m04d27`` | **Mode:** EDEN | **Effort:** Max | **Status:** OPEN (multiple sub-tasks; each has its own status below) | **Origin:** Migrated 2026m04d27 from ``source/matheology/hell/mm/b/19/si/aa-sgir-paper-tasks_2026m04d18.rst`` during the cleanup that followed the Zenodo Prototype Evolvix Compiler description revision (deposit DOI 10.5281/zenodo.19679456). The original flat-named file is now in ``source/matheology/hell/mm/b/19/si/HH/`` for historical reference; this AA b16 file is the canonical home going forward. Background ============= The b19 SGIR pandemic paper (:doc:`/matheology/hell/mm/b/19/b19-sgir_basic-gap-of-germs-2020-epidemiology-oov1_2026`) is at OOv3r0p0 (signed off by Claude Opus 4.7 Max in the 2026m04d21 PDF restructure pass; LLoL Hu-VVN signature line still empty). The remaining finalization tasks are listed below with their AIMS k (Kick = importance) and s (Speed = urgency) coordinates. The task list captures items LLoL identified during the SGIR adversarial review session (2026m04d18) plus items surfaced subsequently. Most are explicitly **deferred** due to LLoL's stated resource constraints --- they would strengthen the paper but are not blocking first submission. Task list ============ .. list-table:: AnyAims Task List for SGIR paper (b19) finalization :header-rows: 1 :widths: 5 5 50 40 * - k - s - Task - Notes / Status * - k5 - s7 - **Buy-in page: discuss global equity pricing.** The $8/person/year cap is deliberately calibrated to the median income of the world's poorest countries (widow's mite principle). The buy-in page should explain: (1) why the cap exists and who it is calibrated for; (2) how those in wealthier countries can sponsor access for others who lack credit cards or bank accounts; (3) the transparency regime that ensures the institution works for everybody including the weakest; (4) how the author's own resource constraints inform choices (e.g., food-supply research for cheap-and-healthy trade-offs) that could benefit others in similar situations if scaled with a team; (5) current extreme inequalities and how the buy-in model addresses them. Defer full discussion until a team is available to help scale transparency. - **Status:** DEFERRED. From adversarial review Panel 7 (Global South) response. LLoL's design intent: everyone can buy-in to the effort of someone audited to work for EVERYBODY. This is not charity; it is shared investment in shared infrastructure. * - k4 - s6 - **Sensitivity analysis for 60-fold result.** Run limited parameter variations (even a few) to show robustness of multiplicative compounding effect. - **Status:** DEFERRED due to resource constraints. Even 3--5 runs with +/-25% variation in Shed and Catch rates would strengthen the paper substantially. * - k4 - s6 - **Non-US scenario.** Add one scenario with different population density and healthcare capacity parameters. - **Status:** DEFERRED. Would demonstrate generality beyond US context. * - k4 - s7 - **Decide what to do with the bridge appendix.** Options: (a) include with SGIR paper as supplementary, (b) publish separately, (c) fold into b18 candidacy as extension, (d) split into multiple targeted pieces. - **Status:** PENDING LLoL DECISION after reviewing appendix draft. * - k3 - s2 - **Full literature review and positioning.** Detailed comparison to Imperial College, IHME, SIDARTHE, and other COVID-19 models. - **Status:** DEFERRED. Key citations added to paper; full review requires more time than currently available. * - k3 - s2 - **ODE system writeout.** Explicit differential equations for the full model. - **Status:** DEFERRED to companion methods paper. Compiler + source code constitute executable specification for now. * - k3 - s3 - **Fill VVN (Hu) signature line in b19 header.** Line 84 of the b19 paper currently shows ``| **VVN (Hu):** |`` (empty). When LLoL is ready to sign off on the paper as human-OO, fill in the Hu VVN. - **Status:** PENDING LLoL DECISION. Surfaced 2026m04d27 during the AA migration. * - k4 - s4 - **Resolve ``si/wwv-sgir-evolvix-study`` toctree placement.** The file is currently commented out of b19's index.rst toctree (lines 34-35) with reason "Removed from toctree to prevent PDF citation conflicts". Decision needed: convert that file to use sphinxcontrib-bibtex (``:cite:`` syntax) instead of RST native footnote citations (``[X]_``), so the bibliography systems don't clash; or commit to a different placement. - **Status:** DONE 2026m04d27 (Claude Opus 4.7 Max, EDEN, max effort). All 12 RST-native ``[X]_`` citations were converted to ``:cite:`X``` against existing ``references.bib`` and ``b19-epidemiology.bib`` entries; ``EvolvixCompiler`` was renamed to ``PrototypeEvolvixCompiler`` per canonical key. File re-added to b19 toctree; build confirmed 0 duplicate-citation warnings. Full audit trail at :doc:`/matheology/hell/ll/infra/b/14/b14-wwv-sgir-bibtex-migration-llog`. * - k4 - s4 - **Deposit ``PandemicSociety101`` model code on Zenodo.** SI.1 of the b19 paper notes this is "planned as part of the same #AuditTheMath campaign". The mechanics are identical to the Evolvix compiler deposit just completed. - **Status:** PENDING. Could be done in parallel with b19 submission or as a separate session. * - k3 - s4 - **Submission path decision for b19.** Options: arXiv preprint, journal submission (which?), Zenodo deposit of paper itself, or all of the above. - **Status:** PENDING LLoL DECISION. Companion prompt: ``si/wwv-sgir-evolvix-study`` toctree resolution ===================================================================== For a fresh Claude session to resolve the toctree-conflict deferred item above. Paste verbatim into the new session. .. container:: verbatim-prompt Dedicated session: resolve the toctree-conflict for ``source/matheology/hell/mm/b/19/si/wwv-sgir-evolvix-study-dv_llol_oov1_2026m04d17.rst`` so it can be re-included in the b19 paper's toctree without triggering Sphinx duplicate-citation-target warnings. Mode: EDEN. Effort: max. THE PROBLEM ----------- The current b19 ``index.rst`` (lines 34-35) shows: .. Removed from toctree to prevent PDF citation conflicts: .. si/wwv-sgir-evolvix-study-dv_llol_oov1_2026m04d17 Two files share the b19 directory tree but use *different* citation systems: - ``b19-sgir_basic-gap-of-germs-2020-epidemiology-oov1_2026.rst`` uses sphinxcontrib-bibtex via ``:cite:`X``` (e.g. ``:cite:`PrototypeEvolvixCompiler``` after the 2026m04d27 migration), with the bibliography entries living in ``source/_bib/references.bib`` and ``source/_bib/b19-epidemiology.bib``. - ``si/wwv-sgir-evolvix-study-dv_llol_oov1_2026m04d17.rst`` uses RST-native footnote-citation syntax via ``[X]_`` for references and ``.. [X] ...`` definitions inline at the end of the file (e.g. ``.. [PrototypeEvolvixCompiler] Loewe, L. (2015). ...``). When both files appear in the same toctree, Sphinx may emit duplicate-target warnings because the ``[X]`` HTML target is produced by both citation systems independently. THE GOAL -------- Convert the wwv-sgir file to use sphinxcontrib-bibtex (``:cite:`X``` syntax) so its citations resolve through the same bibliography pipeline as b19. After conversion, re-add the file to b19's index.rst toctree and confirm the build is clean. STEPS ----- 1. Read ``source/matheology/hell/mm/b/19/si/wwv-sgir-evolvix-study-dv_llol_oov1_2026m04d17.rst`` and inventory all RST-native citations: every ``[X]_`` reference and every ``.. [X] ...`` definition. 2. For each cited key, check whether it already exists in ``source/_bib/references.bib`` or ``source/_bib/b19-epidemiology.bib``. If it exists, the conversion is a syntax change only. If it does not exist, add a new entry to whichever bib file fits its scope (cross-cutting → references.bib; b19-only → b19-epidemiology.bib). 3. Replace ``[X]_`` with ``:cite:`X``` throughout the file. Delete the ``.. [X] ...`` definition lines at the bottom (the bibliography will now be rendered via sphinxcontrib-bibtex's ``bibliography`` directive at the appropriate place in the file). 4. Add a ``bibliography`` directive at the bottom of the file: .. bibliography:: :filter: docname in docnames to render only the citations actually used in this file. 5. Re-add the file to b19's ``index.rst`` toctree (uncomment the lines 34-35). 6. Run ``make dev`` (or ``make html`` for the full multi-language build) and confirm there are no duplicate-citation warnings. Report any warnings honestly --- do not silence them. CONSTRAINTS ----------- - Per LLoL's standing rule (CLAUDE.md): NEVER delete content files; if the wwv-sgir file is deemed obsolete after conversion, move it to a local ``HH/`` HistoryHeap folder for human review, do not delete. - Per CLAUDE.md Language Rules: use "test"/"check" not "validate"/"verify"; YYYYmMMdDD dates; OK/NOT OK not PASS/FAIL. - Do NOT silently change the citation key for ``EvolvixCompiler`` in the wwv-sgir file --- the canonical key in references.bib is now ``PrototypeEvolvixCompiler`` (renamed 2026m04d27); update the wwv-sgir references to match. - The wwv-sgir file is dated 2026m04d17 in its filename; that is historical metadata. Update the file's internal VVN to reflect the conversion (e.g. ``dv_ClaOp47Max_OOv2r0p0_2026m04dXX_HHhMM``) when you record the new state, but do not rename the filename unless LLoL approves. OUTPUT ------ - Updated wwv-sgir file with bibtex-style citations. - Possibly new entries in references.bib or b19-epidemiology.bib. - Updated b19 index.rst with the file re-added to the toctree. - A short report listing: which citations were converted, which bib entries were added (if any), the build outcome (OK / NOT OK with details), and any open items for LLoL. Cross-references ================== - :doc:`/_POST/AnyAims/index` --- AA registry (parent) - :doc:`/matheology/hell/mm/b/19/index` --- the b19 paper home - :doc:`/matheology/hell/mm/b/19/b19-sgir_basic-gap-of-germs-2020-epidemiology-oov1_2026` --- the paper itself - :doc:`/_POST/AnyAims/b/11/b11-evolvix-integration-into-paper-sequence` --- companion AA on Evolvix integration across the broader paper sequence ---- | **Created by:** Claude Opus 4.7 Max in EDEN mode at LLoL's request (2026m04d27), migrating the existing flat-named SGIR-task file into the lettered-numbering AnyAims registry.